First Draft Genome Resource for the Tomato Black Leaf Mold Pathogen Pseudocercospora fuligena.
Identifieur interne : 000165 ( Main/Exploration ); précédent : 000164; suivant : 000166First Draft Genome Resource for the Tomato Black Leaf Mold Pathogen Pseudocercospora fuligena.
Auteurs : Alex Z. Zaccaron [États-Unis] ; Ioannis Stergiopoulos [États-Unis]Source :
- Molecular plant-microbe interactions : MPMI [ 0894-0282 ] ; 2020.
Abstract
Pseudocercospora fuligena is a fungus that causes black leaf mold, an important disease of tomato in tropical and subtropical regions of the world. Despite its economic importance, genomic resources for this pathogen are scarce and no reference genome was available thus far. Here, we report a 50.6-Mb genome assembly for P. fuligena, consisting of 348 contigs with an N50 value of 0.407 Mb. In total, 13,764 protein-coding genes were predicted with an estimated BUSCO completeness of 98%. Among the predicted genes there were 179 candidate effectors, 445 carbohydrate-active enzymes, and 30 secondary metabolite gene clusters. The resources presented in this study will allow genome-wide comparative analyses and population genomic studies of this pathogen, ultimately improving management strategies for black leaf mold of tomato.
DOI: 10.1094/MPMI-06-20-0139-A
PubMed: 33044124
Affiliations:
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Zaccaron</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of California Davis, One Shields Avenue, Davis, CA 95616-8751, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of California Davis, One Shields Avenue, Davis, CA 95616-8751</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Stergiopoulos, Ioannis" sort="Stergiopoulos, Ioannis" uniqKey="Stergiopoulos I" first="Ioannis" last="Stergiopoulos">Ioannis Stergiopoulos</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of California Davis, One Shields Avenue, Davis, CA 95616-8751, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of California Davis, One Shields Avenue, Davis, CA 95616-8751</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">Molecular plant-microbe interactions : MPMI</title><idno type="ISSN">0894-0282</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><i>Pseudocercospora fuligena</i> is a fungus that causes black leaf mold, an important disease of tomato in tropical and subtropical regions of the world. Despite its economic importance, genomic resources for this pathogen are scarce and no reference genome was available thus far. Here, we report a 50.6-Mb genome assembly for <i>P. fuligena,</i> consisting of 348 contigs with an N<sub>50</sub> value of 0.407 Mb. In total, 13,764 protein-coding genes were predicted with an estimated BUSCO completeness of 98%. Among the predicted genes there were 179 candidate effectors, 445 carbohydrate-active enzymes, and 30 secondary metabolite gene clusters. The resources presented in this study will allow genome-wide comparative analyses and population genomic studies of this pathogen, ultimately improving management strategies for black leaf mold of tomato.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">33044124</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>15</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0894-0282</ISSN><JournalIssue CitedMedium="Print"><PubDate><Year>2020</Year><Month>Oct</Month><Day>12</Day></PubDate></JournalIssue><Title>Molecular plant-microbe interactions : MPMI</Title><ISOAbbreviation>Mol Plant Microbe Interact</ISOAbbreviation></Journal><ArticleTitle>First Draft Genome Resource for the Tomato Black Leaf Mold Pathogen <i>Pseudocercospora fuligena</i>.</ArticleTitle><Pagination><MedlinePgn>MPMI06200139A</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1094/MPMI-06-20-0139-A</ELocationID><Abstract><AbstractText><i>Pseudocercospora fuligena</i> is a fungus that causes black leaf mold, an important disease of tomato in tropical and subtropical regions of the world. Despite its economic importance, genomic resources for this pathogen are scarce and no reference genome was available thus far. Here, we report a 50.6-Mb genome assembly for <i>P. fuligena,</i> consisting of 348 contigs with an N<sub>50</sub> value of 0.407 Mb. In total, 13,764 protein-coding genes were predicted with an estimated BUSCO completeness of 98%. Among the predicted genes there were 179 candidate effectors, 445 carbohydrate-active enzymes, and 30 secondary metabolite gene clusters. 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Zaccaron</name></region><name sortKey="Stergiopoulos, Ioannis" sort="Stergiopoulos, Ioannis" uniqKey="Stergiopoulos I" first="Ioannis" last="Stergiopoulos">Ioannis Stergiopoulos</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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